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Mbu

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Malaria in Kenya: risk by region, the pills and the habits that work

The one Kenyan risk you can almost entirely remove with a pill and a long sleeve.

Travel essentials. Updated November 2026. 4 min read.

Information, not medical advice

This page summarizes CDC guidance at the time of writing. Your travel clinic chooses your medicine and dose, based on your health, your age and your route.

CDC Travelers' Health: Kenya

Malaria is the one Kenyan risk you can almost entirely remove with a pill and a long sleeve. Here is where the risk actually is, which pills Americans are prescribed, and the habits that matter more than the pills.

The direct answer: malaria is present in most of Kenya below about 2,500 meters. It is highest on the coast, around Lake Victoria and in the lowland parks, and lower in Nairobi and the central highlands. CDC advises preventive medicine for most Kenya itineraries, because a safari moves you between zones, sometimes in a single day. Your travel clinic will prescribe one of the medicines below. Take it exactly as prescribed, and stop mosquitoes biting from dusk to dawn.

Where the risk is, region by region

RegionMalaria riskGood to know
The coast: Mombasa, Diani, Watamu, LamuHigherPresent all year; peaks after the long rains and the short rains
Lake Victoria and western Kenya: Kisumu, KakamegaHigherWarm, wet and low-lying around the lake
Lowland parks: Tsavo, Meru, SamburuPresentHot, lower-altitude country
Maasai Mara, about 1,500 mLower, but presentPills are still advised
Nairobi, about 1,795 m, and the central highlandsLowMost itineraries leave the city, so pills are usually still advised
Mount Kenya above about 2,500 mLittle or noneThe approach and the lower slopes are a different matter
A broad guide from CDC information at the time of writing. Your clinic assesses your exact route and dates.

The honest line: a short safari in the Mara in July, at about 1,500 meters and in the dry season, carries a low risk. A December beach week in Diani carries a higher one. Pills are still advised for both, and the habits below matter on every trip.

Hippos in a pool below an acacia

The pills, side by side

MedicineHow you take itGood to knowOften suits
Atovaquone-proguanil (Malarone)Daily: start 1 to 2 days before, continue 7 days after you leaveUsually well tolerated; the shortest course after the tripShort trips and first-time safari travelers
DoxycyclineDaily: start 1 to 2 days before, continue 4 weeks after you leaveMakes skin more sensitive to sun; take with food and plenty of waterLonger trips; not for young children or pregnancy
MefloquineWeekly: start at least 2 weeks before, continue 4 weeks after you leaveNot for everyone: your clinic will check your medical history firstPeople who prefer a weekly pill
TafenoquineA newer option in the U.S., on a schedule your clinic setsNeeds a blood test for G6PD deficiency before it is prescribedAdults, if your clinic thinks it fits
The options CDC names for Kenya at the time of writing. Your clinic chooses, and children's doses are worked out by weight.

Whichever you are given, the rule is the same: start on time, take every dose, and keep taking it for the full period after you leave, even when you feel fine at home. Many cases in returning travelers involve missed or stopped pills. Keep the medicine in your hand luggage, in its original packaging.

Bite habits that matter as much as the pills

  • Use repellent with 20 to 30 percent DEET, or picaridin, on exposed skin from late afternoon. Put sunscreen on first, repellent second.
  • Wear long sleeves, long trousers and socks at dusk and after dark. Neutral colours also suit the bush.
  • Clothing treated with permethrin adds protection; CDC lists it as an option.
  • Sleep under the treated net your camp provides, tucked in, and keep tent zips closed.
  • Fans and air conditioning help: mosquitoes struggle in moving, cool air.
  • Take extra care in the hour around sunset at the coast and around Lake Victoria.
Palms leaning over the white sand of Diani beach

If you get a fever

Malaria symptoms are fever, chills, headache and body aches, a lot like flu. They can appear from about 7 days to several weeks after a bite, which means they often start after you are home. Treat any fever during or after a Kenya trip as malaria until a test says otherwise.

  • In Kenya: tell your guide or camp at once. Rapid malaria tests are cheap and widely available, and Nairobi's private hospitals can give a result in about an hour.
  • At home: go to urgent care or an emergency room the same day, say you have been in Kenya, and ask for a malaria test. Do not wait to see if it passes.
  • Keep your clinic's letter or prescription details with you, so a doctor can see what you took.

Children and pregnancy

Children can take antimalarials, with doses by weight, and some medicines are not suitable for young children. CDC advises pregnant women to avoid travel to areas with malaria where possible, because malaria is more dangerous in pregnancy and some medicines cannot be used. If either applies to you, see a travel clinic early and read the CDC pages on children and pregnancy. Our guide to taking children to Kenya covers the rest of family planning.

Flamingos wading in a pink sunset lake

When to book the clinic

See a travel clinic six to eight weeks before you fly, and have your malaria prescription in hand at least four weeks out, so there is time for mefloquine's two-week start or a switch if a medicine does not suit you. The same visit covers your vaccines; our vaccines page has the full list and timeline.

Season and timing

Transmission peaks after the rains, when standing water lets mosquitoes breed. The long rains fall from about late March to May and the short rains around November, so the weeks that follow are the higher-risk times, especially on the coast. Dry-season safaris from July to October carry lower risk in the highland parks. That is a reason to keep your habits sharp in the green season, not a reason to skip the pills in the dry one.

A male lion walking through long grass

Karibu Kenya. Why Kenya, and why us

  • Everything in one trip

    The great safari parks, the Indian Ocean coast, mountains, lakes and more than forty cultures, all in one country.

  • Conservation that works

    Community conservancies and rhino sanctuaries where tourism pays for wildlife and the people who live beside it.

  • Easy from the U.S.

    Apply for the eTA online and fly nonstop from New York to Nairobi, or one stop from most U.S. cities.

  • Planned by Kenyans

    Kenyan guides and hosts, two U.S. companies behind you, and the option to pay monthly with no deposit.

Common questions

Do I need malaria pills for Kenya?

CDC advises preventive malaria medicine for most Kenya itineraries, because most safaris and beach stays are in malaria areas. Your travel clinic decides which medicine suits you. Get the prescription at least four weeks before you fly.

Is there malaria in Nairobi?

The risk in Nairobi, at about 1,795 meters, is low. Most trips leave the city for parks or the coast, so pills are usually still advised. Ask your travel clinic about your exact route.

Is there malaria in the Maasai Mara?

Yes, though the risk is lower than on the coast because the Mara sits at about 1,500 meters. CDC still advises preventive medicine.

Which malaria pill is best for Kenya?

There is no single best pill. CDC lists atovaquone-proguanil (Malarone), doxycycline and mefloquine, among others, and your clinic chooses based on your health, trip length and preferences.

What should I do if I get a fever after visiting Kenya?

Get a malaria test the same day. Tell the doctor you have been in Kenya, because symptoms can appear from about a week to several weeks after a bite.

Can children take malaria pills?

Yes. Doses are worked out by weight, and some medicines are not suitable for young children. See a travel clinic early and follow CDC's advice for children.

More practical information

All practical information